DreEX0014769 @ danRer10
Exon Skipping
Gene
ENSDARG00000035719 | arl5c
Description
ADP-ribosylation factor-like 5C [Source:ZFIN;Acc:ZDB-GENE-040426-1866]
Coordinates
chr3:15989069-15992257:-
Coord C1 exon
chr3:15991837-15992257
Coord A exon
chr3:15989325-15989385
Coord C2 exon
chr3:15989069-15989216
Length
61 bp
Sequences
Splice sites
3' ss Seq
GTTTGGGCTCCTCTTTTCAGAAC
3' ss Score
9.34
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AGGAATTGTTCGAAATCTCGCGTCATCGTCGTGGGTGGCCAATGAGGGATGCCGTTTTGTGAAGCGACCCCTGCGTCACTACTCATCGTTTAAACATACAAACGCCCACGGAAAACACGACGACATTTCGTATTCCGACGCGATATTTTATGTATCAGACACCGATTTAACAGCAGACAGACACTCAGGGAACGAGTGCAGTGAAGAGGACTTGACACACCAGAACAGCGGAGTACTGTCGCTCGTGGATCATTGTTTTTAACCGGACTGTGAAAGTGTCTACAGCTCACTGTAATTAAAGAATCAACGGATCCAGGAGACTATTAAAAGCTGCTGTGGTCGATTGACTATATTTTAAATTCACAGCGTTCAGAAATGGGACTCCTGTTCGCCAAACTGATGACTCTGTTCGGAGACAGAG
Seq A exon
AACACAAAGTGATTATTGTGGGTTTGGACAACGCTGGAAAGACCACCATCCTCTACCAATT
Seq C2 exon
TTTAACGAAAGAAGCAGTACAAACGTCTCCCACAATTGGAAGCAACGTAGAGGAAATCGCCATAAAGAAGACACGCTTTCTTGTCTGGGATATTGGAGGGCAGGAGAGTCTCAGAGCTACCTGGAACTCCTATTACACGAATACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035719-'0-3,'0-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF128032=G-7-MTase=PU(8.0=75.0),PF0002516=Arf=PU(6.9=75.0)
A:
PF128032=G-7-MTase=FE(13.3=100),PF0002516=Arf=FE(11.6=100)
C2:
PF128032=G-7-MTase=FE(32.7=100),PF0002516=Arf=FE(28.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGCTGTGGTCGATTGAC
R:
ACGTTGCTTCCAATTGTGGGA
Band lengths:
142-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]