RnoEX0011635 @ rn6
Exon Skipping
Gene
ENSRNOG00000036880 | Arl5c
Description
ADP-ribosylation factor like GTPase 5C [Source:RGD Symbol;Acc:1563128]
Coordinates
chr10:85945557-85948080:-
Coord C1 exon
chr10:85947839-85948080
Coord A exon
chr10:85947077-85947137
Coord C2 exon
chr10:85945557-85945704
Length
61 bp
Sequences
Splice sites
3' ss Seq
GTTCCCCTGGATGCCTCCAGAGC
3' ss Score
5.13
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
ATCACTTAGACCCTCCGCACGGGCGGGGAGCTAGCGTCCGGCGGGAATCCCAGGTCTCGAGGCGTCACTTGGGGATTCCCACATCTGATAGGAGCAGCGGGTCCGGCCCTCCCCCAGGCGGTGCTTTGAAGATTTGGGGCCAGACTCCAGCCCGGGAGGCTGCTGAGCCCCGCAGGTCCCCAGCTCCGGGAGTGCCATGGGACAGCTGATAGCCAAACTGATGCGAATTTTTGGGAGCCAGG
Seq A exon
AGCACAAAGTCATCATCGTGGGACTGGACAATGCAGGAAAGACCACCATTCTCTACCAGTT
Seq C2 exon
TCTGACCAACGAGGTTGTTCATACCTGTTCCACCATTGGTAGCAACGTGGAAGAAATTGTTTTTCAGAGGACCCACTTCCTCATGTGGGACCTAGGAGGTCAGGAGGCACTGCGCTCCACCTGGGAGACATACTACTCGAATGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036880-'0-4,'0-2,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=PU(8.5=93.8)
A:
PF0002516=Arf=FE(11.4=100)
C2:
PF0002516=Arf=FE(27.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACAGCTGATAGCCAAAC
R:
CCTCCTAGGTCCCACATGAGG
Band lengths:
144-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]