HsaEX6022321 @ hg38
Exon Skipping
Gene
ENSG00000141748 | ARL5C
Description
ADP ribosylation factor like GTPase 5C [Source:HGNC Symbol;Acc:HGNC:31111]
Coordinates
chr17:39164079-39165760:-
Coord C1 exon
chr17:39165715-39165760
Coord A exon
chr17:39165079-39165139
Coord C2 exon
chr17:39164079-39164289
Length
61 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTCCGACGCTTCCAGAGC
3' ss Score
7.94
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
ATGGGACAGCTGATCGCCAAGTTAATGAGCATCTTCGGGAACCAGG
Seq A exon
AGCACACGGTCATCATCGTGGGACTGGACAATGAAGGAAAGACCACCATTCTCTACCGGTT
Seq C2 exon
TGTGGTCTACAGACCAGTCACACAGGCATCACCTGAAAGCTTATTAGGAATGCAAAACCATGGCCGGGCGCTGTTGCTCTCAAAGTGCCTGTAATCGCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGATCAGGAGTTCAAGAGCAGCCTGGCCAACATGGTGAAACCTCGTCTCTACTAAAAATACAACAACAACAACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141748-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF128032=G-7-MTase=PU(8.9=93.8),PF0002516=Arf=PU(8.5=93.8)
A:
PF128032=G-7-MTase=FE(11.9=100),PF0002516=Arf=FE(11.4=100)
C2:
PF0002516=Arf=PD(35.7=62.5)
Main Inclusion Isoform:
ENST00000269586fB9858
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGCTGATCGCCAAGTTA
R:
TGCTGCGATTACAGGCACTTT
Band lengths:
145-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains