GgaEX0012510 @ galGal4
Exon Skipping
Gene
ENSGALG00000008557 | ARL5B
Description
ADP-ribosylation factor-like 5B [Source:RefSeq peptide;Acc:NP_001137441]
Coordinates
chr2:18968609-18977002:-
Coord C1 exon
chr2:18976884-18977002
Coord A exon
chr2:18970029-18970089
Coord C2 exon
chr2:18968609-18968756
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTCCATATACACAGAGC
3' ss Score
8.19
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
CCGCCGACACCACCGCTGTAGTCGTCGCTGCCTCTCCGGGTTCCGAGTGCCCCGAGGTGAGGCTGGGCCAGGCATGGGCCTGATCTTCGCCAAGCTGTGGAGTCTCTTTGGGAACCAAG
Seq A exon
AGCATAAAGTAATCATAGTGGGGCTTGATAATGCTGGAAAGACGACCATCCTTTACCAGTT
Seq C2 exon
CTTAATGAATGAAGTGGTTCATACTTCTCCAACCATAGGAAGCAATGTAGAAGAAATAGTGGTGAAAAACACCCATTTCTTAATGTGGGATATCGGAGGACAAGAATCGTTACGGTCATCATGGAATACCTACTATTCAAACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008557_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=PU(16.7=93.8),PF128032=G-7-MTase=PU(20.0=75.0)
A:
PF0002516=Arf=FE(11.4=100),PF128032=G-7-MTase=FE(32.8=100)
C2:
PF0002516=Arf=FE(27.8=100),PF128032=G-7-MTase=PD(45.9=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTGGAGTCTCTTTGGGA
R:
CCGTAACGATTCTTGTCCTCCG
Band lengths:
142-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]