BtaEX0004334 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043964 | ARL5B
Description
ADP-ribosylation factor-like 5B [Source:HGNC Symbol;Acc:HGNC:23052]
Coordinates
chr13:20592075-20607845:+
Coord C1 exon
chr13:20592075-20592120
Coord A exon
chr13:20605733-20605793
Coord C2 exon
chr13:20607698-20607845
Length
61 bp
Sequences
Splice sites
3' ss Seq
GGTTTGCTTTCTTTTTGTAGAAC
3' ss Score
8.3
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
ATGGGGCTGATCTTCGCGAAACTGTGGAGCCTCTTCTGTAACCAAG
Seq A exon
AACACAAAGTAATTATAGTGGGACTGGATAACGCAGGGAAAACCACCATTCTTTATCAATT
Seq C2 exon
CTTAATGAATGAAGTGGTTCATACATCTCCAACCATAGGAAGCAATGTTGAAGAAATAGTTGTGAAGAACACTCATTTTCTTATGTGGGATATTGGTGGTCAAGAGTCACTTCGATCATCCTGGAACACGTATTACTCAAATACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043964-'2-2,'2-1,7-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=PU(8.5=93.8),PF128032=G-7-MTase=PU(19.7=75.0)
A:
PF0002516=Arf=FE(11.4=100),PF128032=G-7-MTase=FE(32.8=100),PF0231712=Octopine_DH=PU(5.9=33.3)
C2:
PF0002516=Arf=FE(27.8=100),PF128032=G-7-MTase=PD(45.9=56.0),PF0231712=Octopine_DH=FE(41.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAACTGTGGAGCCTCTTC
R:
CGAAGTGACTCTTGACCACCA
Band lengths:
145-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development