MmuEX0011378 @ mm9
Exon Skipping
Gene
ENSMUSG00000029205 | Chrna9
Description
cholinergic receptor, nicotinic, alpha polypeptide 9 [Source:MGI Symbol;Acc:MGI:1202403]
Coordinates
chr5:66359021-66362477:+
Coord C1 exon
chr5:66359021-66359166
Coord A exon
chr5:66360354-66360508
Coord C2 exon
chr5:66362055-66362477
Length
155 bp
Sequences
Splice sites
3' ss Seq
CATCTGGATTCATTGCTTAGGAC
3' ss Score
5.36
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
CCGTAGAGACAGCAAATGGAAAGTATGCCCAGAAATTGTTTAGCGATCTTTTTGAAGACTACTCCAATGCTCTGCGTCCAGTAGAAGATACGGACGCGGTGCTGAACGTCACTCTGCAGGTCACGCTCTCCCAGATAAAGGACATG
Seq A exon
GACGAGAGAAATCAGATTCTGACAGCCTACCTGTGGATCCGCCAAACTTGGCACGATGCGTACCTCACGTGGGATCGAGACCAGTATGACGGGCTGGACTCCATCAGGATTCCCAGCGATCTGGTGTGGAGGCCGGACATTGTCCTCTACAACAA
Seq C2 exon
GGCCGATGACGAGTCTTCAGAGCCGGTGAACACCAACGTGGTCCTGCGGTACGATGGGCTCATCACCTGGGACTCACCAGCCATCACCAAAAGCTCCTGTGTGGTGGATGTCACCTATTTCCCCTTCGACAGCCAGCAGTGCAACCTGACCTTTGGTTCCTGGACCTACAATGGGAACCAGGTGGACATATTCAATGCCCTGGACAGTGGTGACCTCTCTGACTTCATTGAAGACGTGGAATGGGAGGTTCAGGGCATGCCTGCCGTGAAGAACGTCATCTCCTACGGCTGCTGCTCGGAGCCTTACCCAGACGTCACCTTCACTCTCCTTCTGAAGAGGAGGTCTTCCTTTTACATTGTCAACCTCCTCATCCCTTGCGTCCTCATATCGTTCCTCGCTCCGCTGAGTTTCTACCTCCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029205-'9-7,'9-6,11-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=79.6)
A:
PF0293118=Neur_chan_LBD=FE(24.6=100)
C2:
PF0293118=Neur_chan_LBD=PD(55.6=64.2),PF0293211=Neur_chan_memb=PU(24.1=31.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATGCTCTGCGTCCAGTAG
R:
TCCAGGAACCAAAGGTCAGGT
Band lengths:
247-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: