GgaEX1015443 @ galGal4
Exon Skipping
Gene
ENSGALG00000014268 | CHRNA9
Description
Neuronal acetylcholine receptor subunit alpha-9 [Source:UniProtKB/Swiss-Prot;Acc:Q9PTS8]
Coordinates
chr4:68575222-68577511:-
Coord C1 exon
chr4:68577366-68577511
Coord A exon
chr4:68576408-68576562
Coord C2 exon
chr4:68575222-68575754
Length
155 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTATTTTTGTGCAGGAT
3' ss Score
9.45
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CTGTAGAATCAGCCAAAGGGAAATATGCTCAGATGCTGTTCAATGAACTGTTTGAAGACTATTCAAATGCTCTAAGACCAGTGGAAGACACGGATAAAGTGCTGAACGTTACCCTTCAGATAACATTGTCCCAAATTAAAGATATG
Seq A exon
GATGAAAGGAACCAAATTTTGACAGCTTACTTATGGATTCGACAAAGCTGGTATGATGCATACCTCAAATGGGATAAGGATAAATATGATGGATTGGATTCTATCAGAATTCCAAGCAATTTGGTCTGGAGGCCAGATATTGTCCTCTATAACAA
Seq C2 exon
GGCTGATGATGACTTTTCAGAACCCGTTAATACTAATGTTGTGTTGAGATATGATGGAAAAATCACTTGGGATGCACCTGCTATCACAAAAAGCTCGTGTGTAGTGGATGTATCTTATTTTCCTTTTGACAGCCAGCAGTGCAACCTTACGTTTGGTTCCTGGACCTATAATGGTAATCAGGTAGACATCATCAATTCTCTCGATAGTGGTGACCTTTCTGACTTTGTAGAAGACGTGGAATGGGAGATTCATGGTATGCCGGCGGTTAAGAATGTAATCACTTACGGCTGCTGCTCCGAGCCTTATCCAGATGTAACGTTCACGCTGATTTTGAAAAGGAAGTCATCTTTCTACATATTTAATCTTCTGCTTCCTTGCATTTTGATCTCTTTCCTCGCTCCACTGGGATTTTATCTCCCCGCAGACTCTGGAGAAAAAGTGTCTCTAGGTGTTACAGTTCTTCTTGCTCTGACTGTGTTCCAGCTGATGGTTGCAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014268-'3-2,'3-1,5-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=79.6)
A:
PF0293118=Neur_chan_LBD=FE(24.6=100)
C2:
PF0293118=Neur_chan_LBD=PD(55.6=64.2),PF0293211=Neur_chan_memb=PU(23.8=31.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTAAGACCAGTGGAAGACA
R:
GGTCCAGGAACCAAACGTAAGG
Band lengths:
245-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]