RnoEX6042396 @ rn6
Exon Skipping
Gene
ENSRNOG00000002484 | Chrna9
Description
cholinergic receptor nicotinic alpha 9 subunit [Source:RGD Symbol;Acc:621534]
Coordinates
chr14:43885309-43889786:-
Coord C1 exon
chr14:43889641-43889786
Coord A exon
chr14:43888342-43888496
Coord C2 exon
chr14:43885309-43885841
Length
155 bp
Sequences
Splice sites
3' ss Seq
CATCTGGATTCGTTGCTTAGGAC
3' ss Score
4.77
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CCGTAGAGACAGCAAATGGGAAATATGCTCAGAAATTGTTCAGCGATCTTTTTGAAGACTACTCCAGTGCTCTGCGTCCAGTCGAGGATACGGACGCGGTGCTGAATGTTACACTGCAGGTCACGCTCTCCCAGATAAAGGACATG
Seq A exon
GACGAGAGAAACCAGATTCTGACAGCCTATCTATGGATCCGCCAAACCTGGCACGATGCGTACCTCACGTGGGATCGAGACCAGTATGATAGGCTGGACTCCATCAGGATTCCCAGCGATCTGGTGTGGAGGCCGGACATTGTCCTATACAACAA
Seq C2 exon
GGCTGACGATGAGTCTTCAGAGCCTGTGAACACCAATGTGGTGCTGCGATATGATGGGCTCATCACCTGGGACTCACCGGCCATCACCAAAAGCTCCTGTGTGGTGGATGTCACCTACTTCCCTTTTGACAGCCAGCAGTGCAACCTGACCTTTGGCTCCTGGACCTACAATGGAAACCAGGTGGACATATTCAATGCCCTGGACAGCGGTGACCTCTCTGACTTCATTGAAGATGTGGAATGGGAGGTCCATGGCATGCCTGCTGTAAAGAACGTCATCTCCTATGGCTGCTGCTCCGAGCCTTACCCAGATGTCACCTTCACTCTCCTTCTGAAGAGGAGGTCCTCCTTCTACATCGTCAACCTCCTCATCCCTTGCGTCCTCATATCGTTCCTCGCTCCGTTGAGTTTCTATCTCCCAGCAGCCTCTGGGGAGAAGGTCTCTCTGGGAGTGACCATCCTATTGGCCATGACTGTGTTTCAGCTAATGGTGGCAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002484-'1-2,'1-1,3-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=79.6)
A:
PF0293118=Neur_chan_LBD=FE(24.6=100)
C2:
PF0293118=Neur_chan_LBD=PD(55.6=64.2),PF0293211=Neur_chan_memb=PU(24.1=31.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCGTCCAGTCGAGGATA
R:
TAGGTCCAGGAGCCAAAGGTC
Band lengths:
245-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]