DreEX6031543 @ danRer10
Exon Skipping
Gene
ENSDARG00000054680 | chrna9
Description
cholinergic receptor, nicotinic, alpha 9 [Source:ZFIN;Acc:ZDB-GENE-090312-63]
Coordinates
chr1:22717883-22721976:+
Coord C1 exon
chr1:22717883-22718019
Coord A exon
chr1:22721512-22721666
Coord C2 exon
chr1:22721793-22721976
Length
155 bp
Sequences
Splice sites
3' ss Seq
TGTGCTTGACTCTGTGCTAGGAT
3' ss Score
6.61
5' ss Seq
CAAGTAATT
5' ss Score
3.86
Exon sequences
Seq C1 exon
CTGCTCAGGGTCGATTTGCTCAAAAACTGTTGAATGACCTAATGGAGGGCTATTCTAATGCTTTACGGCCTGTGGAGGACACAGACAAAGCCCTTAATGTCACTCTACAGATCACGCTTTCACAGATTAAAGATATG
Seq A exon
GATGAAAGAAACCAGGTGCTGACTACATATCTGTGGGTTCGTCAGATCTGGCATGATGCTTACTTGAGCTGGGATAAAGAAGAATATGATGGACTTGAGGTCATCCGCATTCCCAGCAATCTTGTTTGGAGACCAGACATAGTTTTATATAACAA
Seq C2 exon
TGCAGATGAGGAGGACTCCTCAGGACCCCCAGACACTAATGTGGTGTTGAGATATAATGGTGAGATCACATGGGACTCCCCTGCCATCACCAAGAGTTCTTGTAAGGTGGACGTCTCCTATTTCCCCTTTGATAGTCAGGAATGCAACCTTACCTTTGGCTCCTGGACCTACAATGGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054680-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.177
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(15.5=96.9)
A:
PF0293118=Neur_chan_LBD=FE(25.5=100)
C2:
PF0293118=Neur_chan_LBD=FE(30.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTTTACGGCCTGTGGAG
R:
GGAGCCAAAGGTAAGGTTGCA
Band lengths:
244-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]