BtaEX6030940 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015252 | CHRNA9
Description
Bos taurus cholinergic receptor, nicotinic, alpha 9 (CHRNA9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192546]
Coordinates
chr6:60971425-60980272:+
Coord C1 exon
chr6:60971425-60971570
Coord A exon
chr6:60972479-60972633
Coord C2 exon
chr6:60979740-60980272
Length
155 bp
Sequences
Splice sites
3' ss Seq
TATCTGGGTTAATTGTGCAGGAT
3' ss Score
5.5
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CTGTAGAACCAGCAGATGGAAAATATGCTCAGAAGTTGTTCAATGACCTTTTTGAAGACTACTCTAATGCTCTTCGTCCAGTAGAGGATACAGATAAAGTCCTGAACGTCACACTCCAGATTACACTTTCTCAGATTAAGGATATG
Seq A exon
GATGAGAGAAACCAAATTCTGACTGCCTATTTGTGGATCCGCCAAATCTGGCATGATGCGTATCTCACATGGGATCGAGACCAATATGATGGACTGGACTCCATCAGGATCCCCAGCGACCTGGTGTGGAGACCGGATATTGTCCTATATAACAA
Seq C2 exon
GGCTGACGATGAGTCTTCTGAGCCCGTGAACACCAATGTGGTCCTGCGGTATGACGGCCTGATCACTTGGGATGCACCAGCCATCACCAAAAGCTCCTGTGTGGTGGACGTCACCTACTTCCCCTTTGATAATCAGCAGTGCAACCTGACCTTTGGCTCCTGGACCTACAATGGCAATCAGGTGGATATCTTCAATGCCCTGGACAGTGGAGACCTCTCCGACTTCATTGAAGACGTGGAGTGGGAGGTGCACGGCATGCCTGCTGTGAAGAACGTCATCTCCTACGGCTGCTGCTCTGAGCCTTACCCGGATGTGACGTTCACTCTCCTTCTGAAGAGGAGATCCTCCTTCTACATCGTCAACCTCCTCATCCCATGCGTCCTCATATCTTTCCTGGCTCCCTTGAGTTTCTATCTCCCAGCAGCCTCTGGGGAAAAGGTCTCCCTGGGAGTGACCATACTGTTGGCCATGACTGTATTTCAGCTCATGGTGGCAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015252-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=79.6)
A:
PF0293118=Neur_chan_LBD=FE(24.6=100)
C2:
PF0293118=Neur_chan_LBD=PD(55.6=64.2),PF0293211=Neur_chan_memb=PU(24.1=31.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAACGTCACACTCCAGA
R:
CCACTGTCCAGGGCATTGAAG
Band lengths:
257-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]