MmuEX0012146 @ mm9
Exon Skipping
Gene
ENSMUSG00000058806 | Col13a1
Description
collagen, type XIII, alpha 1 [Source:MGI Symbol;Acc:MGI:1277201]
Coordinates
chr10:61365838-61374481:-
Coord C1 exon
chr10:61374455-61374481
Coord A exon
chr10:61371430-61371465
Coord C2 exon
chr10:61365838-61365888
Length
36 bp
Sequences
Splice sites
3' ss Seq
GTTTCCACCTCCTTCATCAGGGG
3' ss Score
7.25
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGTCCCACTGGAAGACCTGGACTCCCA
Seq A exon
GGGGACAAGGGTGCCATCGGGATGCCTGGACGTGTG
Seq C2 exon
GGTGCCCCTGGAGATGCGGGGATGTCCATCGTCGGGCCTCGAGGCCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058806_MULTIEX2-1/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.2=100)
A:
PF0139113=Collagen=FE(25.0=100)
C2:
PF0139113=Collagen=PD(18.2=47.1),PF0139113=Collagen=PU(11.3=41.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACTGGAAGACCTGGACTC
R:
GAGGCCCGACGATGGACATC
Band lengths:
64-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types