MmuEX0012193 @ mm10
Exon Skipping
Gene
ENSMUSG00000001506 | Col1a1
Description
collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
Coordinates
chr11:94942342-94942902:+
Coord C1 exon
chr11:94942342-94942440
Coord A exon
chr11:94942560-94942613
Coord C2 exon
chr11:94942795-94942902
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTCTCCCTACACAGGGT
3' ss Score
11.35
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGTGCTCCTGGTATTGCTGGTGCTCCTGGCTTCCCTGGTGCCCGAGGCCCCTCTGGACCCCAGGGCCCCAGCGGCCCTCCAGGTCCCAAGGGTAACAGT
Seq A exon
GGTGAACCTGGTGCTCCTGGCAACAAAGGAGACACTGGTGCCAAAGGAGAACCC
Seq C2 exon
GGTGCTACTGGAGTTCAAGGTCCCCCAGGCCCTGCCGGAGAAGAAGGAAAACGAGGAGCCCGTGGTGAGCCTGGACCTTCCGGACTGCCTGGACCTCCTGGCGAGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001506-'18-32,'18-22,28-32=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(16.1=42.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTATTGCTGGTGCTCCTG
R:
CGTTTTCCTTCTTCTCCGGCA
Band lengths:
145-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types