MmuEX0012193 @ mm9
Exon Skipping
Gene
ENSMUSG00000001506 | Col1a1
Description
collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
Coordinates
chr11:94803656-94807232:+
Coord C1 exon
chr11:94803656-94803754
Coord A exon
chr11:94803874-94803927
Coord C2 exon
chr11:94807125-94807232
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTCTCCCTACACAGGGT
3' ss Score
11.35
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGTGCTCCTGGTATTGCTGGTGCTCCTGGCTTCCCTGGTGCCCGAGGCCCCTCTGGACCCCAGGGCCCCAGCGGCCCTCCAGGTCCCAAGGGTAACAGT
Seq A exon
GGTGAACCTGGTGCTCCTGGCAACAAAGGAGACACTGGTGCCAAAGGAGAACCC
Seq C2 exon
GGTGATACTGGTGCCCCCGGAGCTCCCGGTAGCCAGGGTGCCCCCGGTCTTCAGGGAATGCCTGGTGAACGTGGTGCAGCTGGTCTTCCAGGTCCTAAGGGTGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001506_MULTIEX1-4/19=3-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(16.1=42.4)
A:
NO
C2:
PF0139113=Collagen=PU(53.8=97.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGGTCCCAAGGGTAAC
R:
TCTGTCACCCTTAGGACCTGG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: