MmuEX0012274 @ mm10
Exon Skipping
Gene
ENSMUSG00000026043 | Col3a1
Description
collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
Coordinates
chr1:45340255-45341027:+
Coord C1 exon
chr1:45340255-45340308
Coord A exon
chr1:45340630-45340683
Coord C2 exon
chr1:45340866-45341027
Length
54 bp
Sequences
Splice sites
3' ss Seq
GGTTCATTGACATTTCACAGGGT
3' ss Score
4.88
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
GGTCCGCCTGGTCCTCAGGGTGTAAAGGGTGAACGTGGTAGTCCTGGTGGTCCT
Seq A exon
GGTACTGCTGGCTTTCCCGGTGGGCGTGGTCTTCCTGGTCCTCCTGGCAATAAT
Seq C2 exon
GGTAATCCAGGGCCCCCAGGACCCAGTGGTGCTCCTGGCAAGGACGGCCCTCCAGGTCCTGCAGGCAACAGTGGTTCTCCTGGCAACCCTGGAATAGCTGGACCAAAAGGTGATGCTGGACAGCCTGGAGAGAAGGGGCCACCTGGTGCTCAGGGTCCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026043-'49-49,'49-48,51-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(30.0=100)
A:
NO
C2:
PF0139113=Collagen=PU(33.3=48.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTCAGGGTGTAAAGGGT
R:
GTCCAGCTATTCCAGGGTTGC
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types