BtaEX6008587 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021466 | COL3A1
Description
collagen alpha-1(III) chain precursor [Source:RefSeq peptide;Acc:NP_001070299]
Coordinates
chr2:7325839-7326584:-
Coord C1 exon
chr2:7326531-7326584
Coord A exon
chr2:7326198-7326251
Coord C2 exon
chr2:7325839-7326000
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTGTATTTATCATTTTGCAGGGT
3' ss Score
9.26
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GGTCCCCCAGGCCCCCAAGGTGTCAAAGGCGAACGTGGCAGTCCTGGTGGTCCT
Seq A exon
GGTGCTGCTGGCTTCCCCGGTGGTCGTGGTCCTCCTGGCCCTCCTGGCAGTAAT
Seq C2 exon
GGTAACCCAGGCCCCCCAGGCTCCAGTGGTGCTCCAGGCAAAGATGGTCCCCCAGGTCCACCTGGCAGTAATGGTGCTCCTGGCAGCCCCGGGATCTCTGGACCAAAGGGTGATTCTGGTCCACCAGGTGAGAGGGGAGCACCTGGCCCCCAGGGCCCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021466-'45-49,'45-48,46-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(70.7=98.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGTCAAAGGCGAACGTG
R:
ACCCTTTGGTCCAGAGATCCC
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]