GgaEX1016668 @ galGal3
Exon Skipping
Gene
ENSGALG00000002552 | COL3A1
Description
NA
Coordinates
chr7:574355-576342:-
Coord C1 exon
chr7:576289-576342
Coord A exon
chr7:575799-575852
Coord C2 exon
chr7:574355-574516
Length
54 bp
Sequences
Splice sites
3' ss Seq
AAAGTATTGGTTTCTTGTAGGGT
3' ss Score
6.23
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GGTCCGCCTGGTCCCCAAGGAGTAAAAGGAGAACGTGGATCTCCTGGAGGCCCT
Seq A exon
GGTGCTGCTGGTTTCCCTGGTGCTCGTGGTCTACCCGGTCCCCCTGGTAATAAT
Seq C2 exon
GGTAGTCCAGGTCCCCCTGGTAATGCAGGGCCTCCAGGCAAGGATGGGCCTCCTGGACCCCCTGGTAACACTGGTCCTCCTGGTGGCTCTGGACCTCCTGGACTACGTGGTGAGCCTGGAGCACCAGGTGAAAAAGGGCCTCCAGGTGCACGAGGAGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002552-'44-47,'44-46,45-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.3=100)
A:
PF0139113=Collagen=PU(4.3=16.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACGTGGATCTCCTGGAGG
R:
CGTAGTCCAGGAGGTCCAGAG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]