GgaEX1016668 @ galGal4
Exon Skipping
Gene
ENSGALG00000002552 | COL3A1
Description
Gallus gallus collagen, type III, alpha 1 (COL3A1), mRNA. [Source:RefSeq mRNA;Acc:NM_205380]
Coordinates
chr7:569817-571743:-
Coord C1 exon
chr7:571690-571743
Coord A exon
chr7:571200-571253
Coord C2 exon
chr7:569817-569917
Length
54 bp
Sequences
Splice sites
3' ss Seq
AAAGTATTGGTTTCTTGTAGGGT
3' ss Score
6.23
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GGTCCGCCTGGTCCCCAAGGAGTAAAAGGAGAACGTGGATCTCCTGGAGGCCCT
Seq A exon
GGTGCTGCTGGTTTCCCTGGTGCTCGTGGTCTACCCGGTCCCCCTGGTAATAAT
Seq C2 exon
GGTAGTCCAGGTCCCCCTGGTAATGCAGGGCCTCCAGGCAAGGATGGGCCTCCTGGACCCCCTGGTAACACTGGTCCTCCTGGTGGCTCTGGACCTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002552-'50-55,'50-54,51-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGTCCCCAAGGAGTAAA
R:
CCAGGAGGACCAGTGTTACCA
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]