MmuEX0012292 @ mm9
Exon Skipping
Gene
ENSMUSG00000067158 | Col4a4
Description
collagen, type IV, alpha 4 [Source:MGI Symbol;Acc:MGI:104687]
Coordinates
chr1:82482156-82484191:-
Coord C1 exon
chr1:82484087-82484191
Coord A exon
chr1:82483058-82483239
Coord C2 exon
chr1:82482156-82482219
Length
182 bp
Sequences
Splice sites
3' ss Seq
AACACTGCTGACCTCAACAGGTG
3' ss Score
7.87
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAGACAGAGGACTTCCTGGTGATGCAGGAGAAGCAGTCACTTCCAGAAAGGGTGAACCTGGGGATGCTGGGCCTCCAGGAGATGGTGGGTTCTCAGGAGAGAGAG
Seq A exon
GTGATAAAGGAAGCTCAGGGATGCGAGGGGGAAGAGGGGATCCCGGAAGAGATGGACTACCGGGACTCCACAGAGGGCAGCCTGGGATAGATGGGCCTCCTGGGCCTCCTGGGCCCCCTGGCCCTCCAGGATCACCTGGACTGAGAGGAGTCATTGGTTTCCCAGGATTTCCAGGTGACCAG
Seq C2 exon
GGTGATCCAGGTTCTCCAGGACCCCCTGGATTCCCAGGAGATGATGGAGCAAGAGGACCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067158-'34-34,'34-33,35-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(24.6=44.4),PF0139113=Collagen=PU(33.8=61.1)
A:
PF0139113=Collagen=PD(64.6=68.9),PF0139113=Collagen=PU(53.0=57.4)
C2:
PF0139113=Collagen=FE(31.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTTCCTGGTGATGCAGG
R:
CTTTAGGTCCTCTTGCTCCATCA
Band lengths:
162-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: