MmuEX0012299 @ mm10
Exon Skipping
Gene
ENSMUSG00000031274 | Col4a5
Description
collagen, type IV, alpha 5 [Source:MGI Symbol;Acc:MGI:88456]
Coordinates
chrX:141656685-141666975:+
Coord C1 exon
chrX:141656685-141656870
Coord A exon
chrX:141664676-141664684
Coord C2 exon
chrX:141666842-141666975
Length
9 bp
Sequences
Splice sites
3' ss Seq
GTGAACTCTGATCTTCCCAGGTT
3' ss Score
6.9
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
GACAAAAGGGTGATGGAGGATCACCTGGACTTCCAGGAAATCCTGGCCTTCCAGGTTCAAAGGGTGAGCCAGGCTTTCAGGGATTCCCTGGTATGCCAGGTCCCCCAGGTCCTCCTGGTTCTCCTGGTCAAGCTTTGGAAGGTCCCAAAGGAAACCCTGGGCCTCAAGGCCCTCCTGGGAGACCAG
Seq A exon
GTTTTCAAG
Seq C2 exon
GTCCACCAGGTACAGAAGGTCCTCGTGGACCCCCTGGAAATGGAGGTATCAAAGGAGAGAGGGGAAATCCAGGCCCACCTGGGCAGCCAGGCTTACCTGGTTTGAAAGGAGATCAAGGACCACCAGGACTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031274-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(76.7=73.0)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGTCCCAAAGGAAACCC
R:
TACCTCCATTTCCAGGGGGTC
Band lengths:
98-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types