RnoEX0023356 @ rn6
Exon Skipping
Gene
ENSRNOG00000018951 | Col4a5
Description
collagen type IV alpha 5 chain [Source:RGD Symbol;Acc:1565499]
Coordinates
chrX:112956287-112964811:+
Coord C1 exon
chrX:112956287-112956472
Coord A exon
chrX:112961884-112961892
Coord C2 exon
chrX:112964678-112964811
Length
9 bp
Sequences
Splice sites
3' ss Seq
GTGAACTCTGATCTTCCCAGGTT
3' ss Score
6.9
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
GTCAAAAGGGTGATGGAGGAGCCCCTGGCCTTCCAGGAAATCCTGGCCTTCCAGGTTCAAAGGGTGAACCAGGCTTTCAGGGATTCCCTGGTATGCCAGGTCCCCCAGGTCCCCCTGGTTCTCCTGGCCCATCTTTGGAAGGTCCCAAAGGAAACCCTGGGCCTCAAGGCCCTCCTGGGAGACCAG
Seq A exon
GTTTTCAAG
Seq C2 exon
GTCCACCTGGTACAGAAGGTCCTCGTGGCCCCCCTGGAAATGGAGGTATTAAAGGAGAGAGGGGAAATCCAGGTCCACCTGGGCAACCAGGCTTACCTGGCTTGAAAGGAGATCAAGGACCACCAGGCCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018951-MICROEX2-2/2
Average complexity
MIC-M
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(76.7=73.0),PF0139113=Collagen=PU(31.1=30.2)
A:
PF0139113=Collagen=FE(4.9=100)
C2:
PF0139113=Collagen=PD(57.4=77.8),PF0139113=Collagen=PU(45.2=84.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTCCTGGCCCATCTTTGG
R:
CGAGGACCTTCTGTACCAGGT
Band lengths:
94-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]