MmuEX0012299 @ mm9
Exon Skipping
Gene
ENSMUSG00000031274 | Col4a5
Description
collagen, type IV, alpha 5 [Source:MGI Symbol;Acc:MGI:88456]
Coordinates
chrX:138093075-138101518:+
Coord C1 exon
chrX:138093075-138093083
Coord A exon
chrX:138099219-138099227
Coord C2 exon
chrX:138101385-138101518
Length
9 bp
Sequences
Splice sites
3' ss Seq
GTGAACTCTGATCTTCCCAGGTT
3' ss Score
6.9
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
GTCCTCCAG
Seq A exon
GTTTTCAAG
Seq C2 exon
GTCCACCAGGTACAGAAGGTCCTCGTGGACCCCCTGGAAATGGAGGTATCAAAGGAGAGAGGGGAAATCCAGGCCCACCTGGGCAGCCAGGCTTACCTGGTTTGAAAGGAGATCAAGGACCACCAGGACTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031274-MICROEX3
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(5.0=100)
A:
PF0139113=Collagen=FE(5.0=100),PF0139113=Collagen=PU(0.1=0.0)
C2:
PF0139113=Collagen=PD(58.3=77.8),PF0139113=Collagen=PU(49.4=97.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: