HsaEX1009437 @ hg38
Exon Skipping
Gene
ENSG00000188153 | COL4A5
Description
collagen type IV alpha 5 chain [Source:HGNC Symbol;Acc:HGNC:2207]
Coordinates
chrX:108670228-108677579:+
Coord C1 exon
chrX:108670228-108670236
Coord A exon
chrX:108674745-108674753
Coord C2 exon
chrX:108677500-108677579
Length
9 bp
Sequences
Splice sites
3' ss Seq
GTGAACTCTGATCTTCCCAGGTT
3' ss Score
6.9
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
GTCCTACAG
Seq A exon
GTTTTCAAG
Seq C2 exon
GTCTACCAGGTCCAGAAGGTCCTCCAGGTCTCCCTGGAAATGGAGGTATTAAAGGAGAGAAGGGAAATCCAGGCCAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188153-MICROEX4
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(5.1=100)
A:
PF0139113=Collagen=FE(5.1=100)
C2:
PF0139113=Collagen=PD(57.6=75.6),PF0139113=Collagen=PU(42.3=73.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains