MmuEX0012315 @ mm10
Exon Skipping
Gene
ENSMUSG00000026837 | Col5a1
Description
collagen, type V, alpha 1 [Source:MGI Symbol;Acc:MGI:88457]
Coordinates
chr2:28011242-28013567:+
Coord C1 exon
chr2:28011242-28011349
Coord A exon
chr2:28012675-28012728
Coord C2 exon
chr2:28013460-28013567
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATACTGACTTGTCTCCTCAGGGA
3' ss Score
9.67
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGCCCTCCTGGTCCACCAGGCCCCCGAGGACCCTCTGGAGCTCCAGGTGCCGATGGACCACAGGGTCCTCCTGGAGGGATTGGCAACCCTGGTGCAGTCGGAGAAAAG
Seq A exon
GGAGAACCTGGTGAAGCTGGAGATCCTGGCCTTCCAGGAGAAGGAGGTCCCCTG
Seq C2 exon
GGACCTAAAGGAGAAAGAGGGGAGAAGGGAGAGGCTGGCCCCTCTGGTGCTGCTGGACCCCCTGGACCCAAAGGCCCTCCTGGAGATGATGGCCCCAAAGGCAGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026837-'69-67,'69-66,70-67
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTGGAGGGATTGGCAA
R:
CTTTGGGGCCATCATCTCCAG
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types