RnoEX6016118 @ rn6
Exon Skipping
Gene
ENSRNOG00000008749 | Col5a1
Description
collagen type V alpha 1 chain [Source:RGD Symbol;Acc:70920]
Coordinates
chr3:6555084-6557472:+
Coord C1 exon
chr3:6555084-6555191
Coord A exon
chr3:6556542-6556595
Coord C2 exon
chr3:6557365-6557472
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACACCGACTTGTCTCCTCAGGGA
3' ss Score
9.59
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGCCCTCCTGGTCCACCAGGCCCCCGAGGACCCTCTGGAGCTCCAGGAGCTGATGGGCCACAGGGTCCTCCAGGAGGGATTGGCAACCCTGGTGCAGTCGGAGAAAAG
Seq A exon
GGAGAGCCTGGCGAAGCTGGAGAGCCTGGCCTTCCAGGAGAAGGAGGTCCCCTG
Seq C2 exon
GGACCTAAAGGAGAAAGAGGGGAGAAGGGAGAGGCTGGCCCCTCTGGTGCTGCTGGACCCCCTGGACCCAAAGGCCCACCTGGAGATGATGGCCCCAAAGGCAGCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008749-'74-58,'74-57,76-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(53.0=100)
A:
PF0139113=Collagen=FE(25.8=100)
C2:
PF0139113=Collagen=PD(6.1=11.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGAGGGATTGGCAACC
R:
CTTTGGGGCCATCATCTCCAG
Band lengths:
140-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]