MmuEX0016425 @ mm10
Exon Skipping
Gene
ENSMUSG00000015467 | Egfl8
Description
EGF-like domain 8 [Source:MGI Symbol;Acc:MGI:1932094]
Coordinates
chr17:34614484-34615001:-
Coord C1 exon
chr17:34614879-34615001
Coord A exon
chr17:34614669-34614778
Coord C2 exon
chr17:34614484-34614579
Length
110 bp
Sequences
Splice sites
3' ss Seq
AGCCTGCTTCTGTGTTCTAGGAC
3' ss Score
10.23
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
TTTGGGAGTGTGCTCCAAGCAGACGCTGCTGGTTCCTCTCCGTTACAACGAGTCCTATAGTCAACCGGTGTACAAACCCTACCTGACCTTGTGTGCGGGGAGGCGCATATGTAGCACCTACAG
Seq A exon
GACCACATACCGTGTGGCCTGGCGGGAGGTGAGGCGGGAGGTACCACAGACACACGTGGTGTGCTGTCAGGGCTGGAAGAAGCCACACCCAGGAGCTCTCACCTGTGATG
Seq C2 exon
CCATCTGCTCCAAGCCTTGTCTTAATGGAGGTGTCTGCACTGGACCAGACCGGTGCGAGTGTGCCCCAGGCTGGGGAGGAAAGCATTGCCACGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015467-'4-8,'4-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(57.7=97.6)
A:
PF075468=EMI=PD(40.8=76.3)
C2:
PF0000822=EGF=WD(100=81.8),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGTTCCTCTCCGTTAC
R:
CCACGTGGCAATGCTTTCCTC
Band lengths:
194-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types