RnoEX6061560 @ rn6
Exon Skipping
Gene
ENSRNOG00000000436 | Egfl8
Description
EGF-like-domain, multiple 8 [Source:RGD Symbol;Acc:1549706]
Coordinates
chr20:4379290-4379811:-
Coord C1 exon
chr20:4379689-4379811
Coord A exon
chr20:4379478-4379587
Coord C2 exon
chr20:4379290-4379385
Length
110 bp
Sequences
Splice sites
3' ss Seq
AACCTGCTTCCCTGTTCTAGGAC
3' ss Score
11.34
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TTTGGGAGTGTGCTCCAAGCAGACGCTGCTGGTTCCACTCCGTTACAATGAGTCCTACAGTCAACCAGTGTACAGACCCTACCTGACCCTGTGTGCTGGAAGGCGCATATGTAGCACCTACAG
Seq A exon
GACCACGTACCGCGTGGCCTGGAGGGAAGTGAGGCGGGAGGTACAGCAGACACATGTGGTGTGCTGCCAGGGCTGGAAGAAGCCACACCCAGGAGCTCTCACCTGTGAAG
Seq C2 exon
CCATCTGCTCTAAGCCTTGTCTTAATGGAGGTGTGTGCGCCGGACCGGACCAGTGCGAGTGTGCCTCAGGCTGGGCAGGGAAGCACTGCCACGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000436-'4-10,'4-9,5-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(57.7=97.6)
A:
PF075468=EMI=PD(40.8=76.3),PF079748=EGF_2=PU(6.2=5.3)
C2:
PF079748=EGF_2=PD(90.6=87.9),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGTTCCACTCCGTTAC
R:
CCACGTGGCAGTGCTTCC
Band lengths:
194-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]