MmuEX0016916 @ mm10
Exon Skipping
Gene
ENSMUSG00000015085 | Entpd2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:MGI Symbol;Acc:MGI:1096863]
Coordinates
chr2:25398001-25398759:+
Coord C1 exon
chr2:25398001-25398151
Coord A exon
chr2:25398291-25398450
Coord C2 exon
chr2:25398532-25398759
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCCCCTCCCCCATTCCACAGCCT
3' ss Score
10.35
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTGGTGGCATCTCCAGCTACGCAAATGACCCTTCTAGGGCAGGCCAGAGTCTGGTTGAATGTCTTGAACAGGCACTTCGGGATGTGCCCAAAGACAGATATGCCAGCACTCCACTCTACCTGGGAGCTACAGCAGGCATGCGCCTACTCAA
Seq A exon
CCTGACCAGCCCAGAGGCCACAGCCAAGGTGCTGGAGGCAGTGACACAGACGCTCACACGGTACCCCTTTGACTTCCGTGGTGCCCGCATCCTCTCGGGACAGGATGAAGGGGTGTTTGGCTGGGTGACTGCCAACTACCTGCTGGAGAACTTCATCAAG
Seq C2 exon
TATGGCTGGGTAGGCCGGTGGATACGGCCAAGGAAGGGAACTCTGGGGGCCATGGACCTTGGGGGTGCCTCAACACAGATCACCTTTGAGACAACCAGTCCATCTGAAGATCCAGATAATGAGGTCCATTTGCGGCTCTATGGCCAGCATTACCGTGTCTACACCCATAGCTTCCTCTGCTATGGCCGGGACCAGGTTCTCCAGAGGCTTCTGGCCAGTGCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015085_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.7=100)
A:
PF0115012=GDA1_CD39=FE(12.4=100)
C2:
PF0115012=GDA1_CD39=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAACAGGCACTTCGGGATG
R:
GTAGACACGGTAATGCTGGCC
Band lengths:
250-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types