GgaEX6014652 @ galGal3
Exon Skipping
Gene
ENSGALG00000009058 | F1NGR8_CHICK
Description
NA
Coordinates
chr17:789532-790285:+
Coord C1 exon
chr17:789532-789682
Coord A exon
chr17:789808-789967
Coord C2 exon
chr17:790058-790285
Length
160 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCATCTCTCCCGCAGAAT
3' ss Score
12.09
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTCCTGGCATCTCCAGCTACAGCTCCAAACCTCCGGCTGCTGGGAAGAGCTTAGAGCACTGCCTGAGCCAGGCTATGAGAGATGTGCCCAAGGAGAAGCACGCAGACACTCCGCTCTACCTGGGTGCCACAGCTGGCATGCGCCTGCTCAG
Seq A exon
AATTGCAGACCCACCGTCCTCAGACGCTGTCCTCAGTGCAGTGATGGCCACACTGAAGTCGTACCCCTTTGATTTCCGGGGAGCAAAGATCCTGTCAGGGGAAGAGGAGGGGGTGTTTGGCTGGATCACGGCAAACTACCTCCTGGAGAACTTCATCAAG
Seq C2 exon
CGTGGTTGGCTCGGAGAATGGATCCAATCCAAGAAGAAGACCCTGGGGGCCATGGACTTTGGAGGCGCTTCCACACAGATCACTTTTGAAACCAGTGATGCCATTGAAGATCCCAAAAATGAGGTGATGCTGAAGCTGTACGGCCAGCCATACAAGGTGTACACCCATAGCTTCCTCTGCTACGGAAGGGACCAGGTCCTCAAGAGGCTGCTCTCAAAGGTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009058-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.5=100)
A:
PF0115012=GDA1_CD39=FE(12.2=100)
C2:
PF0115012=GDA1_CD39=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGTGCCCAAGGAGAAGC
R:
AGCAGAGGAAGCTATGGGTGT
Band lengths:
254-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]