GgaEX6014652 @ galGal4
Exon Skipping
Gene
ENSGALG00000009058 | ENTPD2
Description
ectonucleoside triphosphate diphosphohydrolase 2 precursor [Source:RefSeq peptide;Acc:NP_990285]
Coordinates
chr17:406237-406990:+
Coord C1 exon
chr17:406237-406387
Coord A exon
chr17:406513-406672
Coord C2 exon
chr17:406763-406990
Length
160 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCATCTCTCCCGCAGAAT
3' ss Score
12.09
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTCCTGGCATCTCCAGCTACAGCTCCAAACCTCCGGCTGCTGGGAAGAGCTTAGAGCACTGCCTGAGCCAGGCTATGAGAGATGTGCCCAAGGAGAAGCACGCAGACACTCCGCTCTACCTGGGTGCCACAGCTGGCATGCGCCTGCTCAG
Seq A exon
AATTGCAGACCCACCGTCCTCAGACGCTGTCCTCAGTGCAGTGATGGCCACACTGAAGTCGTACCCCTTTGATTTCCGGGGAGCAAAGATCCTGTCAGGGGAAGAGGAGGGGGTGTTTGGCTGGATCACGGCAAACTACCTCCTGGAGAACTTCATCAAG
Seq C2 exon
CGTGGTTGGCTCGGAGAATGGATCCAATCCAAGAAGAAGACCCTGGGGGCCATGGACTTTGGAGGCGCTTCCACACAGATCACTTTTGAAACCAGTGATGCCATTGAAGATCCCAAAAATGAGGTGATGCTGAAGCTGTACGGCCAGCCATACAAGGTGTACACCCATAGCTTCCTCTGCTACGGAAGGGACCAGGTCCTCAAGAGGCTGCTCTCAAAGGTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009058-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.5=100)
A:
PF0115012=GDA1_CD39=FE(12.2=100)
C2:
PF0115012=GDA1_CD39=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGTGCCCAAGGAGAAGC
R:
AGCAGAGGAAGCTATGGGTGT
Band lengths:
254-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]