RnoEX0032234 @ rn6
Exon Skipping
Gene
ENSRNOG00000013102 | Entpd2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:RGD Symbol;Acc:69266]
Coordinates
chr3:2619907-2620681:+
Coord C1 exon
chr3:2619907-2620057
Coord A exon
chr3:2620209-2620368
Coord C2 exon
chr3:2620454-2620681
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCCCCTCCTCCATTCCACAGCCT
3' ss Score
10.12
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTGGTGGCATCTCCAGCTATGCAAATGACCCCTCTAAGGCAGGCCAGAGTCTGGTCCGATGCCTTGAGCAGGCCCTTCGGGATGTACCCAGAGACAGACATGCTAGCACACCACTCTACCTGGGAGCTACAGCAGGCATGCGCCTGCTCAA
Seq A exon
CCTGACCAGCCCAGAGGCCACAGCCAGGGTGCTTGAGGCAGTGACACAGACGCTCACACAGTACCCCTTTGACTTCCGTGGTGCTCGCATCCTCTCGGGACAGGATGAAGGGGTGTTTGGCTGGGTGACTGCCAACTACCTGCTGGAGAACTTCATCAAG
Seq C2 exon
TATGGCTGGGTGGGCCGGTGGATACGGCCAAGGAAGGGAACACTGGGGGCCATGGACCTTGGGGGTGCTTCGACACAGATCACCTTTGAGACAACCAGTCCCTCTGAAGATCCAGGCAACGAGGTTCATTTGCGACTCTATGGCCAGCATTACCGCGTTTACACACATAGCTTCCTCTGCTATGGCCGAGACCAGATTCTCCTGAGGCTTCTGGCCAGTGCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013102-'6-4,'6-3,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.7=100)
A:
PF0115012=GDA1_CD39=FE(12.4=100)
C2:
PF0115012=GDA1_CD39=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTAAGGCAGGCCAGAGTCT
R:
GTCGCAAATGAACCTCGTTGC
Band lengths:
256-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]