BtaEX6047591 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048125 | ENTPD2
Description
Bos taurus ectonucleoside triphosphate diphosphohydrolase 2 (ENTPD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001105648]
Coordinates
chr11:106185770-106186574:+
Coord C1 exon
chr11:106185770-106185920
Coord A exon
chr11:106186108-106186267
Coord C2 exon
chr11:106186347-106186574
Length
160 bp
Sequences
Splice sites
3' ss Seq
AAGTCCTCCCTGTATCACAGCCT
3' ss Score
3.76
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTGGAGGCATCTCTAGCTATGCTGACAACCCTTCTGGAGCCGGGCAGAGCCTTGTGGAATGCCTGAACCAGGCGCTTCGGGACGTGCCCAAGGAGAGACACGCGGGCACGCCACTCTACCTGGGAGCCACGGCAGGCATGCGCCTGCTCAA
Seq A exon
CCTGACCAGTCCAGAGGCTTCAGCCAATGTGCTAGCTGCCGTGACGCAGACGCTGACCCAGTACCCCTTTGACTTCCGCGGTGCCCGCATCCTCTCAGGCCAGGATGAGGGTGTGTTTGGCTGGGTGACCGCCAACTACTTGCTGGAAAACTTCATCAAG
Seq C2 exon
TACGGCTGGGTGGGCCGGTGGTTCCGGCCAAGGAAGGGGACGCTGGGGGCCATGGACCTGGGGGGAGCCTCCACACAGATCACCTTCGAGACGACCAGCCCCACGGAGGATCCGGCCAATGAGGTTCAGCTCCGGCTCTACGGCCAGCGCTACCGAGTGTATACTCACAGCTTCCTCTGCTACGGCCGTGACCAGGTTCTGCGGAGGCTGCTAGCCCGTGCGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048125-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.7=100)
A:
PF0115012=GDA1_CD39=FE(12.4=100)
C2:
PF0115012=GDA1_CD39=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCCTTGTGGAATGCCTG
R:
CCGGAGCTGAACCTCATTGG
Band lengths:
242-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]