Special

MmuEX0017511 @ mm9

Exon Skipping

Gene
ENSMUSG00000034282 | Evpl
Description
envoplakin [Source:MGI Symbol;Acc:MGI:107507]
Coordinates
chr11:116094139-116094825:-
Coord C1 exon
chr11:116094700-116094825
Coord A exon
chr11:116094418-116094456
Coord C2 exon
chr11:116094139-116094300
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCTCACTTTGGCTGAGGCAGGAT
3' ss Score
-0.05
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
AATCTGGTCCGTGAGGGCCACTATGGGCCTGGGATGGCAGAGCTGGAACAGCAGGTGGCCGAGCACAACATCCTGCAGAGAGAAATCGAGGCTTACGGGCAGCAGCTGCGGACGCTGGTGGGACCG
Seq A exon
GATGCAAACACCATCAGGAACCAATACCGTGAGCTGCTG
Seq C2 exon
AAGGCGGCCTCGTGGCGCCGACAGAGTCTGGGCAGCCTGTACACCCACCTGCAAGGCTGCACGAAGCAGCTGAGCGCCCTGGCCGATCAACAAGGCCGCATCCTGCAGCAGGATTGGAGTGACCTCATGCCGGACCCCGCTGGCGTGAGGCGAGAGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034282_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.214 A=0.077 C2=0.056
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000037850





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr17:74018270-74018308 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr19:56261730-56261768 
HIGH PSI
BtaEX6090634
(EVPL)
Chicken
(galGal4)
chr18:4535133-4535171 
HIGH PSI
GgaEX0002578
(EVPL)
Chicken
(galGal3)
chr18:4551059-4551097 
HIGH PSI
GgaEX0002578
([1])
Zebrafish
(danRer10)
chr6:17964735-17964776 
HIGH PSI
DreEX0031002
(evpla)
Zebrafish
(danRer10)
KN149912.1:75878-75910 
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CGAGCACAACATCCTGCAGAG

				
R: 
CTTGCAGGTGGGTGTACAGG

				
Band lengths: 
122-161

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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