MmuEX0017511 @ mm10
Exon Skipping
Gene
ENSMUSG00000034282 | Evpl
Description
envoplakin [Source:MGI Symbol;Acc:MGI:107507]
Coordinates
chr11:116232825-116233511:-
Coord C1 exon
chr11:116233386-116233511
Coord A exon
chr11:116233104-116233142
Coord C2 exon
chr11:116232825-116232986
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCTCACTTTGGCTGAGGCAGGAT
3' ss Score
-0.05
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
AATCTGGTCCGTGAGGGCCACTATGGGCCTGGGATGGCAGAGCTGGAACAGCAGGTGGCCGAGCACAACATCCTGCAGAGAGAAATCGAGGCTTACGGGCAGCAGCTGCGGACGCTGGTGGGACCG
Seq A exon
GATGCAAACACCATCAGGAACCAATACCGTGAGCTGCTG
Seq C2 exon
AAGGCGGCCTCGTGGCGCCGACAGAGTCTGGGCAGCCTGTACACCCACCTGCAAGGCTGCACGAAGCAGCTGAGCGCCCTGGCCGATCAACAAGGCCGCATCCTGCAGCAGGATTGGAGTGACCTCATGCCGGACCCCGCTGGCGTGAGGCGAGAGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034282_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.077 C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCACAACATCCTGCAGAG
R:
CTTGCAGGTGGGTGTACAGG
Band lengths:
122-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types