RnoEX6050661 @ rn6
Exon Skipping
Gene
ENSRNOG00000009343 | Evpl
Description
envoplakin [Source:RGD Symbol;Acc:1306141]
Coordinates
chr10:105112108-105112702:-
Coord C1 exon
chr10:105112577-105112702
Coord A exon
chr10:105112376-105112414
Coord C2 exon
chr10:105112108-105112269
Length
39 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCTCTCTTGAGGCAGGAT
3' ss Score
4.08
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AAGCTGATCTGTGAGGGCCACTATGGGCCTGGGATGGCAGAACTGGAACAGCAGGTGGCCGAGCACAACATCCTGCAGAGGGAAATCGAGGCTTACGGGCAGCAGCTGCGGACACTGGTGGGACCG
Seq A exon
GATGCAAACGCCATCAGGAACCAATACCGTGACCTACTG
Seq C2 exon
AAGGCAGCCTCGTGGCGCCGGCAGAGTCTGGGCAGCTTGTACACACACCTGCAGGGCTGCACGAAGCAGCTGGGCGCCCTGGCGGATCAACAAGGCCGCATCCTGCAGCAGGATTGGAGTGACCTCATGCCTGACCCCGCTGGTGTGAGGCGAGAGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009343-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACAACATCCTGCAGAGG
R:
TGCAGGTGTGTGTACAAGCTG
Band lengths:
119-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]