GgaEX0002578 @ galGal4
Exon Skipping
Gene
ENSGALG00000002108 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:HGNC:3503]
Coordinates
chr18:4534766-4535921:+
Coord C1 exon
chr18:4534766-4534891
Coord A exon
chr18:4535133-4535171
Coord C2 exon
chr18:4535760-4535921
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTGGCTGTGTTATAACTCAGGAT
3' ss Score
5.17
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
AAACAAGTCAGTGCAGGACAGTACGGCCCCGGCATGTCAGAGCTGGAGAAGCAAATAGCTGAGCACAATATCCTCCAGAAGGAGATTGAAGCCTATGGCCTTCAGATCAAGAACCTGCGCTGTAGG
Seq A exon
GATGTGACAGATCTGAAGAGCCAATACAAGGACTTGCTG
Seq C2 exon
AAAGCTTCCATCTGGCGAGGGCAGAGTCTGGGCAGCCTGTACCACCACCTGCAGGGCTGCACCAAGGAGCTGGGCTACCTGACGGAGCGGCAGACCTGCATCCTGAAGCAGGACTGGAGTGACCAGATGACAGACGTGCAGAGCGTGCGGCGGGAGTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002108-'5-8,'5-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043516=Spectrin=PU(40.0=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGTCAGAGCTGGAGAAG
R:
CCTCGCCAGATGGAAGCTTT
Band lengths:
116-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]