BtaEX6090634 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010517 | EVPL
Description
Bos taurus envoplakin (EVPL), mRNA. [Source:RefSeq mRNA;Acc:NM_001205676]
Coordinates
chr19:56261403-56262031:+
Coord C1 exon
chr19:56261403-56261528
Coord A exon
chr19:56261730-56261768
Coord C2 exon
chr19:56261870-56262031
Length
39 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCTTGGTCGAGACAGGAC
3' ss Score
2.19
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
AAGCAGGTCTGCGAGGGCCAGTACGGGCCGGGCATGGCGGAGCTGGAGCAGCAGGTCGCCGAACACAATATCCTGCAGAAGGAGATCGAGGCCTACGGGCAGCAGCTGCGGACCCTTGTAGGGCCG
Seq A exon
GACGCGGCCACCATCCGGAGCCAATACCGGGACCTCCTG
Seq C2 exon
AAGGCGGCCTCGTGGCGAGGGCAGAGCCTGGGCAGCCTGTACACGCACCTGCAGGGCTGCACGCGCCAGCTGAACGCCCTGGCCCAGCAGCAGCAGCGCATCCTCCAGCAAGACTGGAGCGACCACCTGGCCGACCCCGCGGGCGTGCGGAGGGAGTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010517-'6-9,'6-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043516=Spectrin=PU(40.0=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCGAACACAATATCCTGC
R:
CAGGTGCGTGTACAGGCTG
Band lengths:
122-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]