DreEX0031002 @ danRer10
Exon Skipping
Gene
ENSDARG00000019808 | evpla
Description
envoplakin a [Source:ZFIN;Acc:ZDB-GENE-030829-19]
Coordinates
chr6:17964233-17965035:+
Coord C1 exon
chr6:17964233-17964364
Coord A exon
chr6:17964735-17964776
Coord C2 exon
chr6:17964874-17965035
Length
42 bp
Sequences
Splice sites
3' ss Seq
AATATTTCTTGTTGCTTCAGGAG
3' ss Score
7.57
5' ss Seq
CTGGTAGGA
5' ss Score
6.77
Exon sequences
Seq C1 exon
AAAGATGCAAGCAAAGAGGAGTATGGCCCAACACTGGCTGACCTGAAAAAGCAGATCGCAGCTCATAACATCCTTCATAAAGAGATTGAGTCTTATAACAATCAGCTAAACCCTGGATCAACCAGTTCTCAG
Seq A exon
GAGGAATATGCTGCCATTAAAAAACAATATGCCAACCTACTG
Seq C2 exon
GATAACTCAAAATGGCGACGTCATTATCTCAACAGTCTGTATGACTACATGCAAGACTGTGACAAGGAGGTGGCATACATGAAGGAAGAGCAGAACAAGATTCTTAAACAGGACTGGAGTGATCAGATGGTCGACCATGCTGACGTTCGCAGACAATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019808-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.466 A=0.214 C2=0.065
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(69.4=100)
A:
PF0043516=Spectrin=PD(12.9=57.1)
C2:
PF0043516=Spectrin=PU(40.6=79.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACACTGGCTGACCTGAAA
R:
TGTTGAGATAATGACGTCGCCA
Band lengths:
139-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]