MmuEX0020638 @ mm9
Exon Skipping
Gene
ENSMUSG00000072723 | Gm10044
Description
predicted gene 10044 [Source:MGI Symbol;Acc:MGI:3641749]
Coordinates
chr14:8618521-8622646:-
Coord C1 exon
chr14:8622532-8622646
Coord A exon
chr14:8620995-8621168
Coord C2 exon
chr14:8618521-8618627
Length
174 bp
Sequences
Splice sites
3' ss Seq
TATTTATGTAAAACCCACAGGCC
3' ss Score
6.2
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AACTGCACTGCACTATGCTTGTGCGCATGGCCACCTGGGGGTGGTAACTCTTCTCATAGAGAGGAACTGCAACATTAATGCCTGCGATGACGACAACTGCACGCCTCTCATTAAG
Seq A exon
GCCTCACAGCATCAGCATGGGGACTGTGTGGCTGCCTTGCTACAACACGGTGCAGATCCCAATGCTGTGGATGCTCTTGGAAACACTGCCCTCCACTATGCAGTACACAGTGAAAACACGTTCATAGCTTCCCAGCTCCTTGAACACAGCGCCAACATTGAAGCCAAAACAAAG
Seq C2 exon
GAGGGCTTCACACCACTTTCACTGGCTCTACGGCAAAACAAAGACCTGATTGGGGAACTTTTAATGCAGAAGGGTGCAAATATACACACAGTGTTCCACCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072723_MULTIEX1-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCACTGCACTATGCTTGT
R:
GAACACTGTGTGTATATTTGCACCC
Band lengths:
210-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: