MmuEX0020639 @ mm9
Exon Skipping
Gene
ENSMUSG00000072723 | Gm10044
Description
predicted gene 10044 [Source:MGI Symbol;Acc:MGI:3641749]
Coordinates
chr14:8609025-8621168:-
Coord C1 exon
chr14:8620995-8621168
Coord A exon
chr14:8618521-8618627
Coord C2 exon
chr14:8609025-8609326
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGTTTGTTTCTCAGGAG
3' ss Score
9.32
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
Exon sequences
Seq C1 exon
GCCTCACAGCATCAGCATGGGGACTGTGTGGCTGCCTTGCTACAACACGGTGCAGATCCCAATGCTGTGGATGCTCTTGGAAACACTGCCCTCCACTATGCAGTACACAGTGAAAACACGTTCATAGCTTCCCAGCTCCTTGAACACAGCGCCAACATTGAAGCCAAAACAAAG
Seq A exon
GAGGGCTTCACACCACTTTCACTGGCTCTACGGCAAAACAAAGACCTGATTGGGGAACTTTTAATGCAGAAGGGTGCAAATATACACACAGTGTTCCACCCAGACAG
Seq C2 exon
TGACTGGTAAGGAGGAAGTTGTTTTAAAAACCAGTACTCCAAGACAAAAAGCATCTAAAGCCAGGAAAACAAACCTACCATCCAACCATCTTCAAAAGACATCTCAAGATCAAAAGGAGAAAAAGAAATGTGATGCAGGACATAGACCTGCACATTCAGGATGTGCTCCTACGAAAACAGCAGAGGAAGCCCAGCAAGGGGAACAGCTTAACAAAGTCCTCAGAAACAAATCAAGGGCATTTCCTGAACCCTTTGAGAAAGAGCTACCACCTAGCATCTCTAAAGCAAATGCCCACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072723_MULTIEX1-2/3=1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCCAGCTCCTTGAACAC
R:
CTGGGCTTCCTCTGCTGTTTT
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: