MmuEX0023019 @ mm10
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31455492-31458053:+
Coord C1 exon
chr2:31455492-31455626
Coord A exon
chr2:31457060-31457188
Coord C2 exon
chr2:31457733-31458053
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCACACCGCTGCCTCCCCAGATG
3' ss Score
7.52
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
ATGTGGATGAGTGTGCGGGCAACACCCACCTCTGCCAGGAGGAACAGCGCTGTGTGAACCTGCTTGGATCCTATAACTGCCTCGCTTCCTGTAGACCTGGCTTCCGGGTAACTGCTGACGGAAGCAACTGTGAAG
Seq A exon
ATGTGGATGAATGTCTAGAACAGCTGGATGAGTGTCACTACAATCAACTCTGTGAGAACACTCCAGGTGGCCACCACTGTGGTTGTCCCAGAGGGTACCGCCAACAGGGTCACAGCCTGCCTTGCCTAG
Seq C2 exon
ACATCAACGAGTGCCTACAGCTGCCCACACCCTGTGTCTACCAGTGTCAGAACCTCCAGGGCAGCTACCGATGCCTGTGCCCACCAGGCCAGACTCTCCTACGGGATGGCAGGACCTGTATCCCCCTGGAACGGAACCGTCAAAACATTACCATTGTCAGCCACCGGAGCCCATTTGGGCCCTGGCTGCGGTCTCGGGTACCCAGGCCCAGTAGTTCCTACCACACCTGGGTCTCCCTCCGGCCTGGTTCTGGGGCCCTGAATAGTGTGGGCCGGGCCTGGTGCCCACCTGGCTTCATAAGGCAGGATGGCGTGTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'125-132,'125-130,126-132
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=37.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGTGAACCTGCTTGGAT
R:
CCGGTGGCTGACAATGGTAAT
Band lengths:
254-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types