RnoEX6016390 @ rn6
Exon Skipping
Gene
ENSRNOG00000062252 | AABR07072853.4
Description
NA
Coordinates
chr3:10387474-10389767:-
Coord C1 exon
chr3:10389633-10389767
Coord A exon
chr3:10388384-10388512
Coord C2 exon
chr3:10387474-10387794
Length
129 bp
Sequences
Splice sites
3' ss Seq
GAACACCACTGCCTCCCCAGATG
3' ss Score
6.01
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
ATGTGGACGAGTGTGCAGGAGACACCCACCTCTGCCAGGAGGGGCAGCACTGTGTGAACCTGCTCGGCTCCTATAACTGCCTCCCTTCCTGTAGGCCTGGCTTCCGGGTAACTGCTGACGGAAGCAACTGCGAAG
Seq A exon
ATGTGGACGAATGCCTGGAACAGCTGGATGAGTGCCACTACAATCAAGTCTGTGAGAACACTCCAGGTGGCTACCACTGTGGTTGTCCCAGAAGGTACCGCCAACAAGGTCACGGCCTGCCTTGCCTAG
Seq C2 exon
ACATCAATGAGTGCCTACAGCTGCCCATGCCCTGTGTCTACCAGTGCCATAACCTCCAGGGCAGCTACCGATGCCTGTGCCCACCAGGCCAGACCCTCCTACAGGATGGCAGGACCTGTAACCCCCTGGGACGGAACGGTCAAAACATTACCATTGTCAGCCACCGGAACCCATCTTTGCCCTGGCTGCGATCTCGGATACCCAGGCCCAATGGTTCCTACCATGCCTGGGTCTCCCTCCGGCCTGGTTCTAGAGCCCTGAGTAGTGTGGGACGGGCCTGGTGCCCACCTGGCTTCATAAGGCAGGATGGCGTGTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062252-'38-49,'38-48,41-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCGGCTCCTATAACTGC
R:
CCGGTGGCTGACAATGGTAAT
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]