MmuEX0023370 @ mm9
Exon Skipping
Gene
ENSMUSG00000051396 | Hspa14
Description
heat shock protein 14 [Source:MGI Symbol;Acc:MGI:1354164]
Coordinates
chr2:3420009-3428526:-
Coord C1 exon
chr2:3428446-3428526
Coord A exon
chr2:3428287-3428369
Coord C2 exon
chr2:3420009-3420057
Length
83 bp
Sequences
Splice sites
3' ss Seq
AATGTGCAGTTCTTTTTCAGGTG
3' ss Score
6.91
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GATGGCCGGGCCGATGTGGTTGCAAATGATGCAGGGGATAGAGTCACACCAGCCATTGTTGCTTACTCGGAACGTGAACAG
Seq A exon
GTGGTTGGACTGGCAGCAAAACAAAGTAGAATAAGACATGTTTCAAGCACAGTAGTGAAAGTGAAACAGATCCTTGGCAGAAG
Seq C2 exon
CTCTGCAGATCCACAAGCTCAGAAATACATCTCAGAAAGTAAATGCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051396_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(36.1=100),PF0135614=A_amylase_inhib=FE(44.1=100)
A:
PF0001215=HSP70=FE(37.5=100),PF0135614=A_amylase_inhib=PD(33.9=71.4)
C2:
PF0001215=HSP70=FE(3.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGATGTGGTTGCAAATGAT
R:
ACTTTCTGAGATGTATTTCTGAGCT
Band lengths:
112-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: