BtaEX6064242 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016451 | HSPA14
Description
Bos taurus heat shock 70kDa protein 14 (HSPA14), mRNA. [Source:RefSeq mRNA;Acc:NM_001046388]
Coordinates
chr13:29779952-29788718:+
Coord C1 exon
chr13:29779952-29780032
Coord A exon
chr13:29780106-29780188
Coord C2 exon
chr13:29788670-29788718
Length
83 bp
Sequences
Splice sites
3' ss Seq
AATAGATTGCTCTTTTTCAGGTT
3' ss Score
8.15
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GATGGCCGGGCTGATGTGGTCGCAAATGATGCAGGCGACAGAGTTACTCCAGCCATTGTTGCTTACTCAAAAAATGAAGAG
Seq A exon
GTTGTTGGATTGGCAGCAAAACAAAGTAGAATAAGGAATATTTCAAACACAGTAATGAAAGTCAAGCAGATCCTTGGCAGAAG
Seq C2 exon
CTCTGATGATCCTCAGTCTCGGAAATACATCACGGAAAGTAAATGTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016451-'3-10,'3-2,4-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=90%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(25.5=100)
A:
PF0001215=HSP70=FE(26.5=100)
C2:
PF0001215=HSP70=FE(3.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCCGGGCTGATGTG
R:
ACATTTACTTTCCGTGATGTATTTCC
Band lengths:
127-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]