GgaEX1029205 @ galGal4
Exon Skipping
Gene
ENSGALG00000006643 | HSPA14
Description
heat shock 70kDa protein 14 [Source:HGNC Symbol;Acc:HGNC:29526]
Coordinates
chr1:7306065-7307199:+
Coord C1 exon
chr1:7306065-7306145
Coord A exon
chr1:7306222-7306304
Coord C2 exon
chr1:7307151-7307199
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCGTGTTTCATTCAGGTT
3' ss Score
11.25
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GACGGCCGCGCCGATGTGGTCGCTAACGACGCCGGAGACAGAGTCACTCCTGCGGTGGTGGCATTCACAGAGAACGAGGAG
Seq A exon
GTTGTGGGCTTAGCTGCAAAGCAGAGCAGAATTAGGAACGTTTCCAACACTGTGGTGAAAGTAAAGCAGATCCTGGGGAGGAG
Seq C2 exon
TTCTGGTGACCCCCAAGCAGAGAAGTATATTAAAGAAAGCAAATGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006643_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(5.2=100)
A:
PF0001215=HSP70=FE(5.4=100)
C2:
PF0001215=HSP70=FE(3.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAACGACGCCGGAGACAGAG
R:
TCTTTAATATACTTCTCTGCTTGGGG
Band lengths:
95-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]