DreEX0038328 @ danRer10
Exon Skipping
Gene
ENSDARG00000058030 | hspa14
Description
heat shock protein 14 [Source:ZFIN;Acc:ZDB-GENE-041210-73]
Coordinates
chr4:9591855-9592694:+
Coord C1 exon
chr4:9591855-9591935
Coord A exon
chr4:9592387-9592469
Coord C2 exon
chr4:9592646-9592694
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTATTTCATTTATCTTCCAGATA
3' ss Score
10.15
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GATGGACGAGCAGATGTTGTAGCCAATGACGCAGGAGACAGAGTCACTCCAGCTGTGGTGGCCTACAGAGACACTGAACAG
Seq A exon
ATAGTGGGAATCGCTGCAAAGCAGGGCAGAATACGAAATGCTGCCAACACCGTTGTTAAAGTGAAGCAGATCCTGGGTAGACG
Seq C2 exon
CTATGATGACCCAGATGCACAAGCACACAAAGAGGAAAGCAAATGCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058030-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.176
Domain overlap (PFAM):
C1:
PF133161=DUF4087=PD(56.8=92.6),PF0001215=HSP70=FE(44.1=100),PF0135614=A_amylase_inhib=FE(55.3=100)
A:
PF0001215=HSP70=FE(5.4=100)
C2:
PF0001215=HSP70=FE(3.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACGAGCAGATGTTGTAGC
R:
TGCATTTGCTTTCCTCTTTGTGTG
Band lengths:
127-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]