RnoEX6054137 @ rn6
Exon Skipping
Gene
ENSRNOG00000015212 | Hspa14
Description
heat shock protein family A, member 14 [Source:RGD Symbol;Acc:1303296]
Coordinates
chr17:78737158-78744901:+
Coord C1 exon
chr17:78737158-78737238
Coord A exon
chr17:78737322-78737404
Coord C2 exon
chr17:78744853-78744901
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAAGTGCTGCTCTTTTTCAGGTG
3' ss Score
9.34
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GATGGCCGGGCCGATGTGGTTGCAAATGATGCGGGGGACAGAGTCACGCCAGCCGTCGTTGCTTACTCGGAACGTGAACAG
Seq A exon
GTGGTTGGACTGGCGGCAAAACAAAGTAGGATAAGGAATATCTCAAGCACGGTAGTGAAAGTAAAACAGATCCTTGGCAGAAG
Seq C2 exon
CACTGCTGATCCACAGGCTCAGAAATATATCTCGGAAAGTAAATGCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015212-'2-9,'2-1,3-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(32.1=100)
A:
PF0001215=HSP70=FE(33.3=100)
C2:
PF0001215=HSP70=FE(3.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGATGTGGTTGCAAATGAT
R:
ACTTTCCGAGATATATTTCTGAGCCT
Band lengths:
112-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]