HsaEX6087616 @ hg19
Exon Skipping
Gene
ENSG00000187522 | HSPA14
Description
heat shock 70kDa protein 14 [Source:HGNC Symbol;Acc:29526]
Coordinates
chr10:14881904-14890656:+
Coord C1 exon
chr10:14881904-14881984
Coord A exon
chr10:14882074-14882156
Coord C2 exon
chr10:14890608-14890656
Length
83 bp
Sequences
Splice sites
3' ss Seq
TATATTATTTTTTTTTTCAGATT
3' ss Score
10.53
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GATGGCCGGGCTGGTGTGGTTGCAAATGATGCCGGTGACCGAGTTACTCCAGCTGTTGTTGCTTACTCAGAAAATGAAGAG
Seq A exon
ATTGTTGGATTGGCAGCAAAACAAAGTAGAATAAGAAATATTTCAAATACAGTAATGAAAGTAAAGCAGATCCTGGGCAGAAG
Seq C2 exon
CTCCAGTGATCCACAAGCTCAGAAATACATCGCGGAAAGTAAATGTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187522-'1-10,'1-1,2-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(22.0=100),PF0135614=A_amylase_inhib=FE(49.1=100)
A:
PF0001215=HSP70=FE(22.9=100),PF0135614=A_amylase_inhib=PD(26.4=50.0)
C2:
PF0001215=HSP70=FE(13.1=100),PF0348410=B5=FE(25.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGTGTGGTTGCAAATGA
R:
AAACATTTACTTTCCGCGATGT
Band lengths:
121-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)