MmuEX0024730 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108469279-108492058:+
Coord C1 exon
chr6:108469279-108469444
Coord A exon
chr6:108473282-108473442
Coord C2 exon
chr6:108491897-108492058
Length
161 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTGTCTCTCATTTAGGCT
3' ss Score
11.22
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GAGCCTCTGTTTGCTGCAAGGGTGATCTACGACCTCCTCTTCTTCTTCATGGTCATCATCATCGTCCTGAACCTGATTTTCGGGGTCATCATTGACACCTTTGCTGACCTGAGGAGTGAGAAGCAAAAGAAGGAGGAGATCTTAAAAACCACGTGCTTCATCTGCG
Seq A exon
GCTTGGAAAGGGACAAGTTTGACAATAAGACTGTCACCTTTGAAGAGCACATCAAGGAAGAGCACAACATGTGGCACTATCTGTGCTTCATCGTGCTGGTGAAAGTGAAGGACTCCACAGAGTACACCGGGCCTGAGAGTTACGTGGCAGAGATGATCAGG
Seq C2 exon
GAAAGAAACCTTGATTGGTTCCCCAGAATGAGAGCCATGTCCCTGGTCAGCAGCGATTCTGAAGGGGAACAGAACGAGCTGAGGAACCTGCAGGAGAAGCTGGAGTCTACCATGAAGCTGGTCACCAATCTTTCTGGCCAGCTGTCAGAACTAAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'73-72,'73-71,74-72
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.389
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(11.3=51.8)
A:
PF153901=DUF4613=PU(31.4=70.4)
C2:
PF153901=DUF4613=FE(43.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTTTGCTGCAAGGGTGA
R:
CAGCTCGTTCTGTTCCCCTTC
Band lengths:
243-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: