DreEX0040335 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35521588-35545417:-
Coord C1 exon
chr11:35545252-35545417
Coord A exon
chr11:35538978-35539138
Coord C2 exon
chr11:35521588-35521749
Length
161 bp
Sequences
Splice sites
3' ss Seq
ACTGTGTTTCTGCTCTACAGGTT
3' ss Score
11.07
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
GAGCCTCTGTTTGCGGCTCGCGTCATCTACGATCTGCTCTTCTTCTTCATGGTCATCATCATCGTCCTCAACCTCATCTTTGGGGTCATTATCGATACCTTCGCAGACCTCAGAAGCGAAAAGCAGAAGAAAGAGGAGGTTCTGAAAACCACCTGCTTTATTTGTG
Seq A exon
GTTTGGAGAGGGACAAGTTTGACAACAAAACGGTGACGTTTGAGGAACACATTAAGGTGGAGCACAACATGTGGCACTATCTCTTCTTCATTGTGCTGGTGAAAGTCAAAGACTCCACTGAATTCACTGGGCCTGAGAGTTATGTGGCTGAAATGATCCGG
Seq C2 exon
GATCACAATCTGGACTGGTTTCCTCGAATGCGCGCCATGTCTCTGGTCAGCAGCGATGCCGAGGGTGAACAGAATGAGATCAGGAGTCTGCAAGAGAAGCTGGAATCCACCATGAAGCTGATCTCCAACCTGTCAAGCCAACTCACAGAACTAAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'69-70,'69-67,70-70
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.222
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(11.5=51.8),PF041569=IncA=PU(28.2=85.7)
A:
PF041569=IncA=FE(31.2=100),PF040489=Sec8_exocyst=PU(15.6=27.8)
C2:
PF041569=IncA=FE(31.2=100),PF040489=Sec8_exocyst=FE(55.2=100),PF079267=TPR_MLP1_2=PU(77.2=81.5),PF064286=Sec2p=PU(66.2=79.6),PF127182=Tropomyosin_1=PU(70.7=75.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTCAACCTCATCTTTGGG
R:
TGAGTTGGCTTGACAGGTTGG
Band lengths:
249-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]