GgaEX1030858 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18516524-18532136:+
Coord C1 exon
chr12:18516524-18516625
Coord A exon
chr12:18520641-18520801
Coord C2 exon
chr12:18531975-18532136
Length
161 bp
Sequences
Splice sites
3' ss Seq
TGTATGTGTCACTCTTGTAGGTT
3' ss Score
9.79
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATCGCACAGAACCAGGTGAAACCATGACTGGGGAGTTTCTCTATTCAGATGTGTGCAAAGCAGGCAGCAGTGAGAACTGTTCTTCAATCATTCCTTCAGATC
Seq A exon
GTTTGGAAAGAGATAAGTTTGATAACAAGACAGTCACCTTTGAAGAGCACATTAAAGAAGAGCACAACATGTGGCATTATTTGTGCTTTATCGTGTTAGTGAAAGTAAAAGATTCAACAGAATATACAGGACCAGAAAGTTACGTGGCAGAAATGATCAAG
Seq C2 exon
GAGCGAAACCTGGACTGGTTCCCCCGGATGAGAGCCATGTCCCTCGTCAGCAGCGACTCGGACGGAGAGCAGAACGAGCTGAGGAACCTGCAGGAGAAGCTGGAGTCCACCATGAAGCTGGTGACCAACCTCTCTGGGCAGCTGTCAGAGCTGAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX1-3/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.389
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(13.1=100)
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGAACCAGGTGAAACCA
R:
CTCTGACAGCTGCCCAGAGAG
Band lengths:
249-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]