Special

GgaEX1030858 @ galGal4

Exon Skipping

Gene
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18516524-18532136:+
Coord C1 exon
chr12:18516524-18516625
Coord A exon
chr12:18520641-18520801
Coord C2 exon
chr12:18531975-18532136
Length
161 bp
Sequences
Splice sites
3' ss Seq
TGTATGTGTCACTCTTGTAGGTT
3' ss Score
9.79
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATCGCACAGAACCAGGTGAAACCATGACTGGGGAGTTTCTCTATTCAGATGTGTGCAAAGCAGGCAGCAGTGAGAACTGTTCTTCAATCATTCCTTCAGATC
Seq A exon
GTTTGGAAAGAGATAAGTTTGATAACAAGACAGTCACCTTTGAAGAGCACATTAAAGAAGAGCACAACATGTGGCATTATTTGTGCTTTATCGTGTTAGTGAAAGTAAAAGATTCAACAGAATATACAGGACCAGAAAGTTACGTGGCAGAAATGATCAAG
Seq C2 exon
GAGCGAAACCTGGACTGGTTCCCCCGGATGAGAGCCATGTCCCTCGTCAGCAGCGACTCGGACGGAGAGCAGAACGAGCTGAGGAACCTGCAGGAGAAGCTGGAGTCCACCATGAAGCTGGTGACCAACCTCTCTGGGCAGCTGTCAGAGCTGAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX1-3/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.057 A=0.000 C2=0.389
Domain overlap (PFAM):

C1:
PF0052026=Ion_trans=FE(13.1=100)
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGAACCAGGTGAAACCA
R:
CTCTGACAGCTGCCCAGAGAG
Band lengths:
249-410
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]